Yes, this is a problem that some with Lyme have... The bugs clog up the detox pathways, causing us to develop sensitivities to all sorts of things we shouldn't have a problem with.
Methylation Cycle Genomic Variants are part of the problem here - the Methylation Cycle is a key detox pathway in the liver, and is also involved with energy metabolism in cells all over the body (mitochondria). Variants in the genes governing the enzymes involved with methylation can cause blockages (or flaws) in how well the body is able to detox (methylate).
See the following for more info:
http://www.heartfixer.com/AMRI-Nutrigenomics.htm
For a test to determine if there are genomic variants affecting your Methylation Cycle (less expensive than the above link):
http://www.holisticheal.com/health-tests/nutrigenomic-testing/comprehensive-methylation-panel-with-methylation-pathway-analysis.html
I have no financial connections with anything mentioned in this post or any websites/companies linked to from this post.