Wilson,
I wanted to pass you an advice that my pharmacist gave me. If taking Doxy, take it with a large glass of water and sit up for at least an hour. One of the side effects is irritation of the oesophagus. Taking it this way can prevent more issues with your digestive tract.
Doxy is less absorbed when taking it with Rif. I had to take Rif on an empty stomach (if possible, my sister couldn't handle it), half an hour before breakfast. You can take the Doxy with or just after your evening meal, then it'll still be possible to sit up for a while.
MarieLS