Dan,
You're correct, that only representative sections of the prostate (not 100%) are viewed by the pathologist. In addition to a gross anatomy and examination of lymph nodes, seminal vesicles, margins, etc., my pathologist examined 14 sections from different areas of the prostate.
My initial biopsy slides were reviewed by Jon Epstein at Johns Hopkins, and the same local pathologist (with a consult) viewed both biopsy and organ-section slides. All examiners agreed on the Gleason score. The only surprise, according to my urologist, was that the post-surgical examination found only one cancerous area. He said that usually, because the biopsies are such a small sample, if cancer is found in one place, it will be in multiple locations.
It's possible that there was still a miniscule amount of Gleason 4 tissue found on your pathological exam, but that the overwhelming majority was 3 +3. You could call the pathology lab where you had your prostate examined and they may be able to provide you with additional review notes that indicate whether or not any G4 was present.
Tim