RapidArc does CtScans every 10 minutes or so. CyberKnife has two built-in XRay machines that take a picture every 20 seconds or so. So theoretically CK should do a better job tracking and compensating for prostate movement. From what I have read, the prostate can move around a bit in less than 10 minutes.
The extra radiation from the CT or Xray is negligible compared to the treatment radiation, from what I have read. And it doesn't add to the toxicity, so this must be true.